weka.core

## Class Utils

- java.lang.Object
- - weka.core.Utils

- All Implemented Interfaces:
    RevisionHandler

      public final class Utils
      extends java.lang.Object
      implements RevisionHandler

  Class implementing some simple utility methods.
  Version:
    $Revision: 11310 $
  Author:
    Eibe Frank, Yong Wang, Len Trigg, Julien Prados

- - ### Field Summary

    Fields
    Modifier and Type | Field and Description
    --- | ---
    `static double` | `log2` The natural logarithm of 2.
    `static double` | `SMALL` The small deviation allowed in double comparisons.

  - ### Constructor Summary

    Constructors
    Constructor and Description
    `Utils()`

  - ### Method Summary

    Methods
    Modifier and Type | Method and Description
    --- | ---
    `static java.lang.String` | `arrayToString(java.lang.Object array)` Returns the given Array in a string representation.
    `static java.lang.String` | `backQuoteChars(java.lang.String string)` Converts carriage returns and new lines in a string into \r and \n.
    `static java.lang.String[]` | `breakUp(java.lang.String s, int columns)` Breaks up the string, if wider than "columns" characters.
    `static <T> T` | `cast(java.lang.Object x)` Casting an object without "unchecked" compile-time warnings.
    `static void` | `checkForRemainingOptions(java.lang.String[] options)` Checks if the given array contains any non-empty options.
    `static java.lang.String` | `convertNewLines(java.lang.String string)` Converts carriage returns and new lines in a string into \r and \n.
    `static java.io.File` | `convertToRelativePath(java.io.File absolute)` Converts a File's absolute path to a path relative to the user (ie start) directory.
    `static double` | `correlation(double[] y1, double[] y2, int n)` Returns the correlation coefficient of two double vectors.
    `static java.lang.String` | `doubleToString(double value, int afterDecimalPoint)` Rounds a double and converts it into String.
    `static java.lang.String` | `doubleToString(double value, int width, int afterDecimalPoint)` Rounds a double and converts it into a formatted decimal-justified String.
    `static boolean` | `eq(double a, double b)` Tests if a is equal to b.
    `static java.lang.Object` | `forName(java.lang.Class<?> classType, java.lang.String className, java.lang.String[] options)` Creates a new instance of an object given it's class name and (optional) arguments to pass to it's setOptions method.
    `static java.lang.Class<?>` | `getArrayClass(java.lang.Class<?> c)` Returns the basic class of an array class (handles multi-dimensional arrays).
    `static int` | `getArrayDimensions(java.lang.Class<?> array)` Returns the dimensions of the given array.
    `static int` | `getArrayDimensions(java.lang.Object array)` Returns the dimensions of the given array.
    `static boolean` | `getDontShowDialog(java.lang.String dialogName)` For a named dialog, returns true if the user has opted not to view it again in the future.
    `static java.lang.String` | `getDontShowDialogResponse(java.lang.String dialogName)` For a named dialog, if the user has opted not to view it again, returns the answer the answer the user supplied when they closed the dialog.
    `static boolean` | `getFlag(char flag, java.lang.String[] options)` Checks if the given array contains the flag "-Char".
    `static boolean` | `getFlag(java.lang.String flag, java.lang.String[] options)` Checks if the given array contains the flag "-String".
    `static java.lang.String` | `getGlobalInfo(java.lang.Object object, boolean addCapabilities)` Utility method for grabbing the global info help (if it exists) from an arbitrary object.
    `static java.lang.String` | `getOption(char flag, java.lang.String[] options)` Gets an option indicated by a flag "-Char" from the given array of strings.
    `static java.lang.String` | `getOption(java.lang.String flag, java.lang.String[] options)` Gets an option indicated by a flag "-String" from the given array of strings.
    `static int` | `getOptionPos(char flag, java.lang.String[] options)` Gets the index of an option or flag indicated by a flag "-Char" from the given array of strings.
    `static int` | `getOptionPos(java.lang.String flag, java.lang.String[] options)` Gets the index of an option or flag indicated by a flag "-String" from the given array of strings.
    `java.lang.String` | `getRevision()` Returns the revision string.
    `static boolean` | `gr(double a, double b)` Tests if a is greater than b.
    `static boolean` | `grOrEq(double a, double b)` Tests if a is greater or equal to b.
    `static double` | `info(int[] counts)` Computes entropy for an array of integers.
    `static boolean` | `isMissingValue(double val)` Tests if the given value codes "missing".
    `static java.lang.String` | `joinOptions(java.lang.String[] optionArray)` Joins all the options in an option array into a single string, as might be used on the command line.
    `static double` | `kthSmallestValue(double[] array, int k)` Returns the kth-smallest value in the array
    `static int` | `kthSmallestValue(int[] array, int k)` Returns the kth-smallest value in the array.
    `static java.lang.String` | `lineWrap(java.lang.String input, int maxLineWidth)` Implements simple line breaking.
    `static double` | `log2(double a)` Returns the logarithm of a for base 2.
    `static double[]` | `logs2probs(double[] a)` Converts an array containing the natural logarithms of probabilities stored in a vector back into probabilities.
    `static void` | `main(java.lang.String[] ops)` Main method for testing this class.
    `static int` | `maxIndex(double[] doubles)` Returns index of maximum element in a given array of doubles.
    `static int` | `maxIndex(int[] ints)` Returns index of maximum element in a given array of integers.
    `static double` | `mean(double[] vector)` Computes the mean for an array of doubles.
    `static int` | `minIndex(double[] doubles)` Returns index of minimum element in a given array of doubles.
    `static int` | `minIndex(int[] ints)` Returns index of minimum element in a given array of integers.
    `static double` | `missingValue()` Returns the value used to code a missing value.
    `static void` | `normalize(double[] doubles)` Normalizes the doubles in the array by their sum.
    `static void` | `normalize(double[] doubles, double sum)` Normalizes the doubles in the array using the given value.
    `static java.lang.String` | `padLeft(java.lang.String inString, int length)` Pads a string to a specified length, inserting spaces on the left as required.
    `static java.lang.String` | `padRight(java.lang.String inString, int length)` Pads a string to a specified length, inserting spaces on the right as required.
    `static java.lang.String[]` | `partitionOptions(java.lang.String[] options)` Returns the secondary set of options (if any) contained in the supplied options array.
    `static int` | `probRound(double value, java.util.Random rand)` Rounds a double to the next nearest integer value in a probabilistic fashion (e.g.
    `static double` | `probToLogOdds(double prob)` Returns the log-odds for a given probabilitiy.
    `static java.lang.String` | `quote(java.lang.String string)` Quotes a string if it contains special characters.
    `static java.util.Properties` | `readProperties(java.lang.String resourceName)` Reads properties that inherit from three locations.
    `static java.lang.String` | `removeSubstring(java.lang.String inString, java.lang.String substring)` Removes all occurrences of a string from another string.
    `static void` | `replaceMissingWithMAX_VALUE(double[] array)` Replaces all "missing values" in the given array of double values with MAX_VALUE.
    `static java.lang.String` | `replaceSubstring(java.lang.String inString, java.lang.String subString, java.lang.String replaceString)` Replaces with a new string, all occurrences of a string from another string.
    `static java.lang.String` | `revertNewLines(java.lang.String string)` Reverts \r and \n in a string into carriage returns and new lines.
    `static int` | `round(double value)` Rounds a double to the next nearest integer value.
    `static double` | `roundDouble(double value, int afterDecimalPoint)` Rounds a double to the given number of decimal places.
    `static void` | `setDontShowDialog(java.lang.String dialogName)` Specify that the named dialog is not to be displayed in the future.
    `static void` | `setDontShowDialogResponse(java.lang.String dialogName, java.lang.String response)` Specify that the named dialog is not to be shown again in the future.
    `static boolean` | `sm(double a, double b)` Tests if a is smaller than b.
    `static boolean` | `smOrEq(double a, double b)` Tests if a is smaller or equal to b.
    `static int[]` | `sort(double[] array)` Sorts a given array of doubles in ascending order and returns an array of integers with the positions of the elements of the original array in the sorted array.
    `static int[]` | `sort(int[] array)` Sorts a given array of integers in ascending order and returns an array of integers with the positions of the elements of the original array in the sorted array.
    `static int[]` | `sortWithNoMissingValues(double[] array)` Sorts a given array of doubles in ascending order and returns an array of integers with the positions of the elements of the original array in the sorted array.
    `static java.lang.String[]` | `splitOptions(java.lang.String quotedOptionString)` Split up a string containing options into an array of strings, one for each option.
    `static int[]` | `stableSort(double[] array)` Sorts a given array of doubles in ascending order and returns an array of integers with the positions of the elements of the original array in the sorted array.
    `static double` | `sum(double[] doubles)` Computes the sum of the elements of an array of doubles.
    `static int` | `sum(int[] ints)` Computes the sum of the elements of an array of integers.
    `static java.lang.String` | `toCommandLine(java.lang.Object obj)` Generates a commandline of the given object.
    `static java.lang.String` | `unbackQuoteChars(java.lang.String string)` The inverse operation of backQuoteChars().
    `static java.lang.String` | `unquote(java.lang.String string)` unquotes are previously quoted string (but only if necessary), i.e., it removes the single quotes around it.
    `static double` | `variance(double[] vector)` Computes the variance for an array of doubles.
    `static double` | `xlogx(int c)` Returns c*log2(c) for a given integer value c.

    - ### Methods inherited from class java.lang.Object

      `equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

- - ### Field Detail

    - #### log2

          public static double log2

      The natural logarithm of 2.

    - #### SMALL

          public static double SMALL

      The small deviation allowed in double comparisons.

  - ### Constructor Detail

    - #### Utils

          public Utils()

  - ### Method Detail

    - #### isMissingValue

          public static boolean isMissingValue(double val)

      Tests if the given value codes "missing".
      Parameters:
        `val` - the value to be tested
      Returns:
        true if val codes "missing"

    - #### missingValue

          public static double missingValue()

      Returns the value used to code a missing value. Note that equality tests on this value will always return false, so use isMissingValue(double val) for testing..
      Returns:
        the value used as missing value.

    - #### cast

          public static <T> T cast(java.lang.Object x)

      Casting an object without "unchecked" compile-time warnings. Use only when absolutely necessary (e.g. when using clone()).

    - #### readProperties

          public static java.util.Properties readProperties(java.lang.String resourceName)
                                                     throws java.lang.Exception

      Reads properties that inherit from three locations. Properties are first defined in the system resource location (i.e. in the CLASSPATH). These default properties must exist. Properties optionally defined in the user properties location (WekaPackageManager.PROPERTIES_DIR) override default settings. Properties defined in the current directory (optional) override all these settings.
      Parameters:
        `resourceName` - the location of the resource that should be loaded. e.g.: "weka/core/Utils.props". (The use of hardcoded forward slashes here is OK - see jdk1.1/docs/guide/misc/resources.html) This routine will also look for the file (in this case) "Utils.props" in the users home directory and the current directory.
      Returns:
        the Properties
      Throws:
        `java.lang.Exception` - if no default properties are defined, or if an error occurs reading the properties files.

    - #### correlation

          public static final double correlation(double[] y1,
                           double[] y2,
                           int n)

      Returns the correlation coefficient of two double vectors.
      Parameters:
        `y1` - double vector 1
        `y2` - double vector 2
        `n` - the length of two double vectors
      Returns:
        the correlation coefficient

    - #### removeSubstring

          public static java.lang.String removeSubstring(java.lang.String inString,
                                         java.lang.String substring)

      Removes all occurrences of a string from another string.
      Parameters:
        `inString` - the string to remove substrings from.
        `substring` - the substring to remove.
      Returns:
        the input string with occurrences of substring removed.

    - #### replaceSubstring

          public static java.lang.String replaceSubstring(java.lang.String inString,
                                          java.lang.String subString,
                                          java.lang.String replaceString)

      Replaces with a new string, all occurrences of a string from another string.
      Parameters:
        `inString` - the string to replace substrings in.
        `subString` - the substring to replace.
        `replaceString` - the replacement substring
      Returns:
        the input string with occurrences of substring replaced.

    - #### padLeft

          public static java.lang.String padLeft(java.lang.String inString,
                                 int length)

      Pads a string to a specified length, inserting spaces on the left as required. If the string is too long, characters are removed (from the right).
      Parameters:
        `inString` - the input string
        `length` - the desired length of the output string
      Returns:
        the output string

    - #### padRight

          public static java.lang.String padRight(java.lang.String inString,
                                  int length)

      Pads a string to a specified length, inserting spaces on the right as required. If the string is too long, characters are removed (from the right).
      Parameters:
        `inString` - the input string
        `length` - the desired length of the output string
      Returns:
        the output string

    - #### doubleToString

          public static java.lang.String doubleToString(double value,
                                        int afterDecimalPoint)

      Rounds a double and converts it into String.
      Parameters:
        `value` - the double value
        `afterDecimalPoint` - the (maximum) number of digits permitted after the decimal point
      Returns:
        the double as a formatted string

    - #### doubleToString

          public static java.lang.String doubleToString(double value,
                                        int width,
                                        int afterDecimalPoint)

      Rounds a double and converts it into a formatted decimal-justified String. Trailing 0's are replaced with spaces.
      Parameters:
        `value` - the double value
        `width` - the width of the string
        `afterDecimalPoint` - the number of digits after the decimal point
      Returns:
        the double as a formatted string

    - #### getArrayClass

          public static java.lang.Class<?> getArrayClass(java.lang.Class<?> c)

      Returns the basic class of an array class (handles multi-dimensional arrays).
      Parameters:
        `c` - the array to inspect
      Returns:
        the class of the innermost elements

    - #### getArrayDimensions

          public static int getArrayDimensions(java.lang.Class<?> array)

      Returns the dimensions of the given array. Even though the parameter is of type "Object" one can hand over primitve arrays, e.g. int[3] or double[2][4].
      Parameters:
        `array` - the array to determine the dimensions for
      Returns:
        the dimensions of the array

    - #### getArrayDimensions

          public static int getArrayDimensions(java.lang.Object array)

      Returns the dimensions of the given array. Even though the parameter is of type "Object" one can hand over primitve arrays, e.g. int[3] or double[2][4].
      Parameters:
        `array` - the array to determine the dimensions for
      Returns:
        the dimensions of the array

    - #### arrayToString

          public static java.lang.String arrayToString(java.lang.Object array)

      Returns the given Array in a string representation. Even though the parameter is of type "Object" one can hand over primitve arrays, e.g. int[3] or double[2][4].
      Parameters:
        `array` - the array to return in a string representation
      Returns:
        the array as string

    - #### eq

          public static boolean eq(double a,
                   double b)

      Tests if a is equal to b.
      Parameters:
        `a` - a double
        `b` - a double

    - #### checkForRemainingOptions

          public static void checkForRemainingOptions(java.lang.String[] options)
                                               throws java.lang.Exception

      Checks if the given array contains any non-empty options.
      Parameters:
        `options` - an array of strings
      Throws:
        `java.lang.Exception` - if there are any non-empty options

    - #### getFlag

          public static boolean getFlag(char flag,
                        java.lang.String[] options)
                                 throws java.lang.Exception

      Checks if the given array contains the flag "-Char". Stops searching at the first marker "--". If the flag is found, it is replaced with the empty string.
      Parameters:
        `flag` - the character indicating the flag.
        `options` - the array of strings containing all the options.
      Returns:
        true if the flag was found
      Throws:
        `java.lang.Exception` - if an illegal option was found

    - #### getFlag

          public static boolean getFlag(java.lang.String flag,
                        java.lang.String[] options)
                                 throws java.lang.Exception

      Checks if the given array contains the flag "-String". Stops searching at the first marker "--". If the flag is found, it is replaced with the empty string.
      Parameters:
        `flag` - the String indicating the flag.
        `options` - the array of strings containing all the options.
      Returns:
        true if the flag was found
      Throws:
        `java.lang.Exception` - if an illegal option was found

    - #### getOption

          public static java.lang.String getOption(char flag,
                                   java.lang.String[] options)
                                            throws java.lang.Exception

      Gets an option indicated by a flag "-Char" from the given array of strings. Stops searching at the first marker "--". Replaces flag and option with empty strings.
      Parameters:
        `flag` - the character indicating the option.
        `options` - the array of strings containing all the options.
      Returns:
        the indicated option or an empty string
      Throws:
        `java.lang.Exception` - if the option indicated by the flag can't be found

    - #### getOption

          public static java.lang.String getOption(java.lang.String flag,
                                   java.lang.String[] options)
                                            throws java.lang.Exception

      Gets an option indicated by a flag "-String" from the given array of strings. Stops searching at the first marker "--". Replaces flag and option with empty strings.
      Parameters:
        `flag` - the String indicating the option.
        `options` - the array of strings containing all the options.
      Returns:
        the indicated option or an empty string
      Throws:
        `java.lang.Exception` - if the option indicated by the flag can't be found

    - #### getOptionPos

          public static int getOptionPos(char flag,
                         java.lang.String[] options)

      Gets the index of an option or flag indicated by a flag "-Char" from the given array of strings. Stops searching at the first marker "--".
      Parameters:
        `flag` - the character indicating the option.
        `options` - the array of strings containing all the options.
      Returns:
        the position if found, or -1 otherwise

    - #### getOptionPos

          public static int getOptionPos(java.lang.String flag,
                         java.lang.String[] options)

      Gets the index of an option or flag indicated by a flag "-String" from the given array of strings. Stops searching at the first marker "--".
      Parameters:
        `flag` - the String indicating the option.
        `options` - the array of strings containing all the options.
      Returns:
        the position if found, or -1 otherwise

    - #### quote

          public static java.lang.String quote(java.lang.String string)

      Quotes a string if it contains special characters. The following rules are applied: A character is backquoted version of it is one of `" ' % \ \n \r \t` . A string is enclosed within single quotes if a character has been backquoted using the previous rule above or contains `{ }` or is exactly equal to the strings `, ? space or ""` (empty string). A quoted question mark distinguishes it from the missing value which is represented as an unquoted question mark in arff files.
      Parameters:
        `string` - the string to be quoted
      Returns:
        the string (possibly quoted)
      See Also:
        `unquote(String)`

    - #### unquote

          public static java.lang.String unquote(java.lang.String string)

      unquotes are previously quoted string (but only if necessary), i.e., it removes the single quotes around it. Inverse to quote(String).
      Parameters:
        `string` - the string to process
      Returns:
        the unquoted string
      See Also:
        `quote(String)`

    - #### backQuoteChars

          public static java.lang.String backQuoteChars(java.lang.String string)

      Converts carriage returns and new lines in a string into \r and \n. Backquotes the following characters: ` " \ \t and %
      Parameters:
        `string` - the string
      Returns:
        the converted string
      See Also:
        `unbackQuoteChars(String)`

    - #### convertNewLines

          public static java.lang.String convertNewLines(java.lang.String string)

      Converts carriage returns and new lines in a string into \r and \n.
      Parameters:
        `string` - the string
      Returns:
        the converted string

    - #### revertNewLines

          public static java.lang.String revertNewLines(java.lang.String string)

      Reverts \r and \n in a string into carriage returns and new lines.
      Parameters:
        `string` - the string
      Returns:
        the converted string

    - #### partitionOptions

          public static java.lang.String[] partitionOptions(java.lang.String[] options)

      Returns the secondary set of options (if any) contained in the supplied options array. The secondary set is defined to be any options after the first "--". These options are removed from the original options array.
      Parameters:
        `options` - the input array of options
      Returns:
        the array of secondary options

    - #### unbackQuoteChars

          public static java.lang.String unbackQuoteChars(java.lang.String string)

      The inverse operation of backQuoteChars(). Converts back-quoted carriage returns and new lines in a string to the corresponding character ('\r' and '\n'). Also "un"-back-quotes the following characters: ` " \ \t and %
      Parameters:
        `string` - the string
      Returns:
        the converted string
      See Also:
        `backQuoteChars(String)`

    - #### splitOptions

          public static java.lang.String[] splitOptions(java.lang.String quotedOptionString)
                                                 throws java.lang.Exception

      Split up a string containing options into an array of strings, one for each option.
      Parameters:
        `quotedOptionString` - the string containing the options
      Returns:
        the array of options
      Throws:
        `java.lang.Exception` - in case of an unterminated string, unknown character or a parse error

    - #### joinOptions

          public static java.lang.String joinOptions(java.lang.String[] optionArray)

      Joins all the options in an option array into a single string, as might be used on the command line.
      Parameters:
        `optionArray` - the array of options
      Returns:
        the string containing all options.

    - #### forName

          public static java.lang.Object forName(java.lang.Class<?> classType,
                                 java.lang.String className,
                                 java.lang.String[] options)
                                          throws java.lang.Exception

      Creates a new instance of an object given it's class name and (optional) arguments to pass to it's setOptions method. If the object implements OptionHandler and the options parameter is non-null, the object will have it's options set. Example use:

      ``

           String classifierName = Utils.getOption('W', options);
           Classifier c = (Classifier)Utils.forName(Classifier.class,
                                                    classifierName,
                                                    options);
           setClassifier(c);

      Parameters:
        `classType` - the class that the instantiated object should be assignable to -- an exception is thrown if this is not the case
        `className` - the fully qualified class name of the object
        `options` - an array of options suitable for passing to setOptions. May be null. Any options accepted by the object will be removed from the array.
      Returns:
        the newly created object, ready for use.
      Throws:
        `java.lang.Exception` - if the class name is invalid, or if the class is not assignable to the desired class type, or the options supplied are not acceptable to the object

    - #### toCommandLine

          public static java.lang.String toCommandLine(java.lang.Object obj)

      Generates a commandline of the given object. If the object is not implementing OptionHandler, then it will only return the classname, otherwise also the options.
      Parameters:
        `obj` - the object to turn into a commandline
      Returns:
        the commandline

    - #### info

          public static double info(int[] counts)

      Computes entropy for an array of integers.
      Parameters:
        `counts` - array of counts
      Returns:
        - a log2 a - b log2 b - c log2 c + (a+b+c) log2 (a+b+c) when given array [a b c]

    - #### smOrEq

          public static boolean smOrEq(double a,
                       double b)

      Tests if a is smaller or equal to b.
      Parameters:
        `a` - a double
        `b` - a double

    - #### grOrEq

          public static boolean grOrEq(double a,
                       double b)

      Tests if a is greater or equal to b.
      Parameters:
        `a` - a double
        `b` - a double

    - #### sm

          public static boolean sm(double a,
                   double b)

      Tests if a is smaller than b.
      Parameters:
        `a` - a double
        `b` - a double

    - #### gr

          public static boolean gr(double a,
                   double b)

      Tests if a is greater than b.
      Parameters:
        `a` - a double
        `b` - a double

    - #### kthSmallestValue

          public static int kthSmallestValue(int[] array,
                             int k)

      Returns the kth-smallest value in the array.
      Parameters:
        `array` - the array of integers
        `k` - the value of k
      Returns:
        the kth-smallest value

    - #### kthSmallestValue

          public static double kthSmallestValue(double[] array,
                                int k)

      Returns the kth-smallest value in the array
      Parameters:
        `array` - the array of double
        `k` - the value of k
      Returns:
        the kth-smallest value

    - #### log2

          public static double log2(double a)

      Returns the logarithm of a for base 2.
      Parameters:
        `a` - a double
      Returns:
        the logarithm for base 2

    - #### maxIndex

          public static int maxIndex(double[] doubles)

      Returns index of maximum element in a given array of doubles. First maximum is returned.
      Parameters:
        `doubles` - the array of doubles
      Returns:
        the index of the maximum element

    - #### maxIndex

          public static int maxIndex(int[] ints)

      Returns index of maximum element in a given array of integers. First maximum is returned.
      Parameters:
        `ints` - the array of integers
      Returns:
        the index of the maximum element

    - #### mean

          public static double mean(double[] vector)

      Computes the mean for an array of doubles.
      Parameters:
        `vector` - the array
      Returns:
        the mean

    - #### minIndex

          public static int minIndex(int[] ints)

      Returns index of minimum element in a given array of integers. First minimum is returned.
      Parameters:
        `ints` - the array of integers
      Returns:
        the index of the minimum element

    - #### minIndex

          public static int minIndex(double[] doubles)

      Returns index of minimum element in a given array of doubles. First minimum is returned.
      Parameters:
        `doubles` - the array of doubles
      Returns:
        the index of the minimum element

    - #### normalize

          public static void normalize(double[] doubles)

      Normalizes the doubles in the array by their sum.
      Parameters:
        `doubles` - the array of double
      Throws:
        `java.lang.IllegalArgumentException` - if sum is Zero or NaN

    - #### normalize

          public static void normalize(double[] doubles,
                       double sum)

      Normalizes the doubles in the array using the given value.
      Parameters:
        `doubles` - the array of double
        `sum` - the value by which the doubles are to be normalized
      Throws:
        `java.lang.IllegalArgumentException` - if sum is zero or NaN

    - #### logs2probs

          public static double[] logs2probs(double[] a)

      Converts an array containing the natural logarithms of probabilities stored in a vector back into probabilities. The probabilities are assumed to sum to one.
      Parameters:
        `a` - an array holding the natural logarithms of the probabilities
      Returns:
        the converted array

    - #### probToLogOdds

          public static double probToLogOdds(double prob)

      Returns the log-odds for a given probabilitiy.
      Parameters:
        `prob` - the probabilitiy
      Returns:
        the log-odds after the probability has been mapped to [Utils.SMALL, 1-Utils.SMALL]

    - #### round

          public static int round(double value)

      Rounds a double to the next nearest integer value. The JDK version of it doesn't work properly.
      Parameters:
        `value` - the double value
      Returns:
        the resulting integer value

    - #### probRound

          public static int probRound(double value,
                      java.util.Random rand)

      Rounds a double to the next nearest integer value in a probabilistic fashion (e.g. 0.8 has a 20% chance of being rounded down to 0 and a 80% chance of being rounded up to 1). In the limit, the average of the rounded numbers generated by this procedure should converge to the original double.
      Parameters:
        `value` - the double value
        `rand` - the random number generator
      Returns:
        the resulting integer value

    - #### replaceMissingWithMAX_VALUE

          public static void replaceMissingWithMAX_VALUE(double[] array)

      Replaces all "missing values" in the given array of double values with MAX_VALUE.
      Parameters:
        `array` - the array to be modified.

    - #### roundDouble

          public static double roundDouble(double value,
                           int afterDecimalPoint)

      Rounds a double to the given number of decimal places.
      Parameters:
        `value` - the double value
        `afterDecimalPoint` - the number of digits after the decimal point
      Returns:
        the double rounded to the given precision

    - #### sort

          public static int[] sort(int[] array)

      Sorts a given array of integers in ascending order and returns an array of integers with the positions of the elements of the original array in the sorted array. The sort is stable. (Equal elements remain in their original order.)
      Parameters:
        `array` - this array is not changed by the method!
      Returns:
        an array of integers with the positions in the sorted array.

    - #### sort

          public static int[] sort(double[] array)

      Sorts a given array of doubles in ascending order and returns an array of integers with the positions of the elements of the original array in the sorted array. NOTE THESE CHANGES: the sort is no longer stable and it doesn't use safe floating-point comparisons anymore. Occurrences of Double.NaN are treated as Double.MAX_VALUE.
      Parameters:
        `array` - this array is not changed by the method!
      Returns:
        an array of integers with the positions in the sorted array.

    - #### sortWithNoMissingValues

          public static int[] sortWithNoMissingValues(double[] array)

      Sorts a given array of doubles in ascending order and returns an array of integers with the positions of the elements of the original array in the sorted array. Missing values in the given array are replaced by Double.MAX_VALUE, so the array is modified in that case!
      Parameters:
        `array` - the array to be sorted, which is modified if it has missing values
      Returns:
        an array of integers with the positions in the sorted array.

    - #### stableSort

          public static int[] stableSort(double[] array)

      Sorts a given array of doubles in ascending order and returns an array of integers with the positions of the elements of the original array in the sorted array. The sort is stable (Equal elements remain in their original order.) Occurrences of Double.NaN are treated as Double.MAX_VALUE
      Parameters:
        `array` - this array is not changed by the method!
      Returns:
        an array of integers with the positions in the sorted array.

    - #### variance

          public static double variance(double[] vector)

      Computes the variance for an array of doubles.
      Parameters:
        `vector` - the array
      Returns:
        the variance

    - #### sum

          public static double sum(double[] doubles)

      Computes the sum of the elements of an array of doubles.
      Parameters:
        `doubles` - the array of double
      Returns:
        the sum of the elements

    - #### sum

          public static int sum(int[] ints)

      Computes the sum of the elements of an array of integers.
      Parameters:
        `ints` - the array of integers
      Returns:
        the sum of the elements

    - #### xlogx

          public static double xlogx(int c)

      Returns c*log2(c) for a given integer value c.
      Parameters:
        `c` - an integer value
      Returns:
        c*log2(c) (but is careful to return 0 if c is 0)

    - #### convertToRelativePath

          public static java.io.File convertToRelativePath(java.io.File absolute)
                                                    throws java.lang.Exception

      Converts a File's absolute path to a path relative to the user (ie start) directory. Includes an additional workaround for Cygwin, which doesn't like upper case drive letters.
      Parameters:
        `absolute` - the File to convert to relative path
      Returns:
        a File with a path that is relative to the user's directory
      Throws:
        `java.lang.Exception` - if the path cannot be constructed

    - #### getDontShowDialog

          public static boolean getDontShowDialog(java.lang.String dialogName)

      For a named dialog, returns true if the user has opted not to view it again in the future.
      Parameters:
        `dialogName` - the name of the dialog to check (e.g. weka.gui.GUICHooser.HowToFindPackageManager).
      Returns:
        true if the user has opted not to view the named dialog in the future.

    - #### setDontShowDialog

          public static void setDontShowDialog(java.lang.String dialogName)
                                        throws java.lang.Exception

      Specify that the named dialog is not to be displayed in the future.
      Parameters:
        `dialogName` - the name of the dialog not to show again (e.g. weka.gui.GUIChooser.HowToFindPackageManager).
      Throws:
        `java.lang.Exception` - if the marker file that is used to indicate that a named dialog is not to be shown can't be created. This file lives in $WEKA_HOME/systemDialogs

    - #### getDontShowDialogResponse

          public static java.lang.String getDontShowDialogResponse(java.lang.String dialogName)
                                                            throws java.lang.Exception

      For a named dialog, if the user has opted not to view it again, returns the answer the answer the user supplied when they closed the dialog. Returns null if the user did opt to view the dialog again.
      Parameters:
        `dialogName` - the name of the dialog to check (e.g. weka.gui.GUICHooser.HowToFindPackageManager).
      Returns:
        the answer the user supplied the last time they viewed the named dialog (if they opted not to view it again in the future) or null if the user opted to view the dialog again in the future.
      Throws:
        `java.lang.Exception`

    - #### setDontShowDialogResponse

          public static void setDontShowDialogResponse(java.lang.String dialogName,
                                       java.lang.String response)
                                                throws java.lang.Exception

      Specify that the named dialog is not to be shown again in the future. Also records the answer that the user chose when closing the dialog.
      Parameters:
        `dialogName` - the name of the dialog to no longer display
        `response` - the user selected response when they closed the dialog
      Throws:
        `java.lang.Exception` - if there is a problem saving the information

    - #### breakUp

          public static java.lang.String[] breakUp(java.lang.String s,
                                   int columns)

      Breaks up the string, if wider than "columns" characters.
      Parameters:
        `s` - the string to process
        `columns` - the width in columns
      Returns:
        the processed string

    - #### getGlobalInfo

          public static java.lang.String getGlobalInfo(java.lang.Object object,
                                       boolean addCapabilities)

      Utility method for grabbing the global info help (if it exists) from an arbitrary object. Can also append capabilities information if the object is a CapabilitiesHandler.
      Parameters:
        `object` - the object to grab global info from
        `addCapabilities` - true if capabilities information is to be added to the result
      Returns:
        the global help info or null if global info does not exist

    - #### lineWrap

          public static java.lang.String lineWrap(java.lang.String input,
                                  int maxLineWidth)

      Implements simple line breaking. Reformats the given string by introducing line breaks so that, ideally, no line exceeds the given number of characters. Line breaks are assumed to be indicated by newline characters. Existing line breaks are left in the input text.
      Parameters:
        `input` - the string to line wrap
        `maxLineWidth` - the maximum permitted number of characters in a line
      Returns:
        the processed string

    - #### getRevision

          public java.lang.String getRevision()

      Returns the revision string.
      Specified by:
        `getRevision` in interface `RevisionHandler`
      Returns:
        the revision

    - #### main

          public static void main(java.lang.String[] ops)

      Main method for testing this class.
      Parameters:
        `ops` - some dummy options