weka.core

## Class Instances

- java.lang.Object
- - java.util.AbstractCollection<E>
  - - java.util.AbstractList<Instance>
    - - weka.core.Instances

- All Implemented Interfaces:
    java.io.Serializable, java.lang.Iterable<Instance>, java.util.Collection<Instance>, java.util.List<Instance>, RevisionHandler

      public class Instances
      extends java.util.AbstractList<Instance>
      implements java.io.Serializable, RevisionHandler

  Class for handling an ordered set of weighted instances.

  Typical usage:

       import weka.core.converters.ConverterUtils.DataSource;
       ...

       // Read all the instances in the file (ARFF, CSV, XRFF, ...)
       DataSource source = new DataSource(filename);
       Instances instances = source.getDataSet();

       // Make the last attribute be the class
       instances.setClassIndex(instances.numAttributes() - 1);

       // Print header and instances.
       System.out.println("\nDataset:\n");
       System.out.println(instances);

       ...

  All methods that change a set of instances are safe, ie. a change of a set of instances does not affect any other sets of instances. All methods that change a datasets's attribute information clone the dataset before it is changed.

  Version:
    $Revision: 11342 $
  Author:
    Eibe Frank (eibe@cs.waikato.ac.nz), Len Trigg (trigg@cs.waikato.ac.nz), FracPete (fracpete at waikato dot ac dot nz)
  See Also:
    Serialized Form

- - ### Field Summary

    Fields
    Modifier and Type | Field and Description
    --- | ---
    `static java.lang.String` | `ARFF_DATA` The keyword used to denote the start of the arff data section
    `static java.lang.String` | `ARFF_RELATION` The keyword used to denote the start of an arff header
    `static java.lang.String` | `FILE_EXTENSION` The filename extension that should be used for arff files
    `static java.lang.String` | `SERIALIZED_OBJ_FILE_EXTENSION` The filename extension that should be used for bin.

  - ### Constructor Summary

    Constructors
    Constructor and Description
    `Instances(Instances dataset)` Constructor copying all instances and references to the header information from the given set of instances.
    `Instances(Instances dataset, int capacity)` Constructor creating an empty set of instances.
    `Instances(Instances source, int first, int toCopy)` Creates a new set of instances by copying a subset of another set.
    `Instances(java.io.Reader reader)` Reads an ARFF file from a reader, and assigns a weight of one to each instance.
    `Instances(java.io.Reader reader, int capacity)` Deprecated. instead of using this method in conjunction with the `readInstance(Reader)` method, one should use the `ArffLoader` or `DataSource` class instead.
    `Instances(java.lang.String name, java.util.ArrayList<Attribute> attInfo, int capacity)` Creates an empty set of instances.

  - ### Method Summary

    Methods
    Modifier and Type | Method and Description
    --- | ---
    `boolean` | `add(Instance instance)` Adds one instance to the end of the set.
    `void` | `add(int index, Instance instance)` Adds one instance at the given position in the list.
    `Attribute` | `attribute(int index)` Returns an attribute.
    `Attribute` | `attribute(java.lang.String name)` Returns an attribute given its name.
    `AttributeStats` | `attributeStats(int index)` Calculates summary statistics on the values that appear in this set of instances for a specified attribute.
    `double[]` | `attributeToDoubleArray(int index)` Gets the value of all instances in this dataset for a particular attribute.
    `boolean` | `checkForAttributeType(int attType)` Checks for attributes of the given type in the dataset
    `boolean` | `checkForStringAttributes()` Checks for string attributes in the dataset
    `boolean` | `checkInstance(Instance instance)` Checks if the given instance is compatible with this dataset.
    `Attribute` | `classAttribute()` Returns the class attribute.
    `int` | `classIndex()` Returns the class attribute's index.
    `void` | `compactify()` Compactifies the set of instances.
    `void` | `delete()` Removes all instances from the set.
    `void` | `delete(int index)` Removes an instance at the given position from the set.
    `void` | `deleteAttributeAt(int position)` Deletes an attribute at the given position (0 to numAttributes() - 1).
    `void` | `deleteAttributeType(int attType)` Deletes all attributes of the given type in the dataset.
    `void` | `deleteStringAttributes()` Deletes all string attributes in the dataset.
    `void` | `deleteWithMissing(Attribute att)` Removes all instances with missing values for a particular attribute from the dataset.
    `void` | `deleteWithMissing(int attIndex)` Removes all instances with missing values for a particular attribute from the dataset.
    `void` | `deleteWithMissingClass()` Removes all instances with a missing class value from the dataset.
    `java.util.Enumeration<Attribute>` | `enumerateAttributes()` Returns an enumeration of all the attributes.
    `java.util.Enumeration<Instance>` | `enumerateInstances()` Returns an enumeration of all instances in the dataset.
    `boolean` | `equalHeaders(Instances dataset)` Checks if two headers are equivalent.
    `java.lang.String` | `equalHeadersMsg(Instances dataset)` Checks if two headers are equivalent.
    `Instance` | `firstInstance()` Returns the first instance in the set.
    `Instance` | `get(int index)` Returns the instance at the given position.
    `java.util.Random` | `getRandomNumberGenerator(long seed)` Returns a random number generator.
    `java.lang.String` | `getRevision()` Returns the revision string.
    `void` | `insertAttributeAt(Attribute att, int position)` Inserts an attribute at the given position (0 to numAttributes()) and sets all values to be missing.
    `Instance` | `instance(int index)` Returns the instance at the given position.
    `double` | `kthSmallestValue(Attribute att, int k)` Returns the kth-smallest attribute value of a numeric attribute.
    `double` | `kthSmallestValue(int attIndex, int k)` Returns the kth-smallest attribute value of a numeric attribute.
    `Instance` | `lastInstance()` Returns the last instance in the set.
    `static void` | `main(java.lang.String[] args)` Main method for this class.
    `double` | `meanOrMode(Attribute att)` Returns the mean (mode) for a numeric (nominal) attribute as a floating-point value.
    `double` | `meanOrMode(int attIndex)` Returns the mean (mode) for a numeric (nominal) attribute as a floating-point value.
    `static Instances` | `mergeInstances(Instances first, Instances second)` Merges two sets of Instances together.
    `int` | `numAttributes()` Returns the number of attributes.
    `int` | `numClasses()` Returns the number of class labels.
    `int` | `numDistinctValues(Attribute att)` Returns the number of distinct values of a given attribute.
    `int` | `numDistinctValues(int attIndex)` Returns the number of distinct values of a given attribute.
    `int` | `numInstances()` Returns the number of instances in the dataset.
    `void` | `randomize(java.util.Random random)` Shuffles the instances in the set so that they are ordered randomly.
    `boolean` | `readInstance(java.io.Reader reader)` Deprecated. instead of using this method in conjunction with the `readInstance(Reader)` method, one should use the `ArffLoader` or `DataSource` class instead.
    `java.lang.String` | `relationName()` Returns the relation's name.
    `Instance` | `remove(int index)` Removes the instance at the given position.
    `void` | `renameAttribute(Attribute att, java.lang.String name)` Renames an attribute.
    `void` | `renameAttribute(int att, java.lang.String name)` Renames an attribute.
    `void` | `renameAttributeValue(Attribute att, java.lang.String val, java.lang.String name)` Renames the value of a nominal (or string) attribute value.
    `void` | `renameAttributeValue(int att, int val, java.lang.String name)` Renames the value of a nominal (or string) attribute value.
    `void` | `replaceAttributeAt(Attribute att, int position)` Replaces the attribute at the given position (0 to numAttributes()) with the given attribute and sets all its values to be missing.
    `Instances` | `resample(java.util.Random random)` Creates a new dataset of the same size using random sampling with replacement.
    `Instances` | `resampleWithWeights(java.util.Random random)` Creates a new dataset of the same size using random sampling with replacement according to the current instance weights.
    `Instances` | `resampleWithWeights(java.util.Random random, boolean representUsingWeights)` Creates a new dataset of the same size using random sampling with replacement according to the current instance weights.
    `Instances` | `resampleWithWeights(java.util.Random random, boolean[] sampled)` Creates a new dataset of the same size using random sampling with replacement according to the current instance weights.
    `Instances` | `resampleWithWeights(java.util.Random random, boolean[] sampled, boolean representUsingWeights)` Creates a new dataset of the same size using random sampling with replacement according to the current instance weights.
    `Instances` | `resampleWithWeights(java.util.Random random, double[] weights)` Creates a new dataset of the same size using random sampling with replacement according to the given weight vector.
    `Instances` | `resampleWithWeights(java.util.Random random, double[] weights, boolean[] sampled)` Creates a new dataset of the same size using random sampling with replacement according to the given weight vector.
    `Instances` | `resampleWithWeights(java.util.Random random, double[] weights, boolean[] sampled, boolean representUsingWeights)` Creates a new dataset of the same size using random sampling with replacement according to the given weight vector.
    `Instance` | `set(int index, Instance instance)` Replaces the instance at the given position.
    `void` | `setClass(Attribute att)` Sets the class attribute.
    `void` | `setClassIndex(int classIndex)` Sets the class index of the set.
    `void` | `setRelationName(java.lang.String newName)` Sets the relation's name.
    `int` | `size()` Returns the number of instances in the dataset.
    `void` | `sort(Attribute att)` Sorts the instances based on an attribute.
    `void` | `sort(int attIndex)` Sorts the instances based on an attribute.
    `void` | `stableSort(Attribute att)` Sorts the instances based on an attribute, using a stable sort.
    `void` | `stableSort(int attIndex)` Sorts the instances based on an attribute, using a stable sort.
    `void` | `stratify(int numFolds)` Stratifies a set of instances according to its class values if the class attribute is nominal (so that afterwards a stratified cross-validation can be performed).
    `Instances` | `stringFreeStructure()` Create a copy of the structure if the data has string or relational attributes, "cleanses" string types (i.e.
    `double` | `sumOfWeights()` Computes the sum of all the instances' weights.
    `void` | `swap(int i, int j)` Swaps two instances in the set.
    `static void` | `test(java.lang.String[] argv)` Method for testing this class.
    `Instances` | `testCV(int numFolds, int numFold)` Creates the test set for one fold of a cross-validation on the dataset.
    `java.lang.String` | `toString()` Returns the dataset as a string in ARFF format.
    `java.lang.String` | `toSummaryString()` Generates a string summarizing the set of instances.
    `Instances` | `trainCV(int numFolds, int numFold)` Creates the training set for one fold of a cross-validation on the dataset.
    `Instances` | `trainCV(int numFolds, int numFold, java.util.Random random)` Creates the training set for one fold of a cross-validation on the dataset.
    `double` | `variance(Attribute att)` Computes the variance for a numeric attribute.
    `double` | `variance(int attIndex)` Computes the variance for a numeric attribute.
    `double[]` | `variances()` Computes the variance for all numeric attributes simultaneously.

    - ### Methods inherited from class java.util.AbstractList

      `addAll, clear, equals, hashCode, indexOf, iterator, lastIndexOf, listIterator, listIterator, subList`

    - ### Methods inherited from class java.util.AbstractCollection

      `addAll, contains, containsAll, isEmpty, remove, removeAll, retainAll, toArray, toArray`

    - ### Methods inherited from class java.lang.Object

      `getClass, notify, notifyAll, wait, wait, wait`

    - ### Methods inherited from interface java.util.List

      `addAll, contains, containsAll, isEmpty, remove, removeAll, retainAll, toArray, toArray`

- - ### Field Detail

    - #### FILE_EXTENSION

          public static final java.lang.String FILE_EXTENSION

      The filename extension that should be used for arff files
      See Also:
        Constant Field Values

    - #### SERIALIZED_OBJ_FILE_EXTENSION

          public static final java.lang.String SERIALIZED_OBJ_FILE_EXTENSION

      The filename extension that should be used for bin. serialized instances files
      See Also:
        Constant Field Values

    - #### ARFF_RELATION

          public static final java.lang.String ARFF_RELATION

      The keyword used to denote the start of an arff header
      See Also:
        Constant Field Values

    - #### ARFF_DATA

          public static final java.lang.String ARFF_DATA

      The keyword used to denote the start of the arff data section
      See Also:
        Constant Field Values

  - ### Constructor Detail

    - #### Instances

          public Instances(java.io.Reader reader)
                    throws java.io.IOException

      Reads an ARFF file from a reader, and assigns a weight of one to each instance. Lets the index of the class attribute be undefined (negative).
      Parameters:
        `reader` - the reader
      Throws:
        `java.io.IOException` - if the ARFF file is not read successfully

    - #### Instances

          @Deprecated
          public Instances(java.io.Reader reader,
                              int capacity)
                    throws java.io.IOException

      Deprecated. instead of using this method in conjunction with the `readInstance(Reader)` method, one should use the `ArffLoader` or `DataSource` class instead.
      Reads the header of an ARFF file from a reader and reserves space for the given number of instances. Lets the class index be undefined (negative).
      Parameters:
        `reader` - the reader
        `capacity` - the capacity
      Throws:
        `java.lang.IllegalArgumentException` - if the header is not read successfully or the capacity is negative.
        `java.io.IOException` - if there is a problem with the reader.
      See Also:
        `ArffLoader`, `ConverterUtils.DataSource`

    - #### Instances

          public Instances(Instances dataset)

      Constructor copying all instances and references to the header information from the given set of instances.
      Parameters:
        `dataset` - the set to be copied

    - #### Instances

          public Instances(Instances dataset,
                   int capacity)

      Constructor creating an empty set of instances. Copies references to the header information from the given set of instances. Sets the capacity of the set of instances to 0 if its negative.
      Parameters:
        `dataset` - the instances from which the header information is to be taken
        `capacity` - the capacity of the new dataset

    - #### Instances

          public Instances(Instances source,
                   int first,
                   int toCopy)

      Creates a new set of instances by copying a subset of another set.
      Parameters:
        `source` - the set of instances from which a subset is to be created
        `first` - the index of the first instance to be copied
        `toCopy` - the number of instances to be copied
      Throws:
        `java.lang.IllegalArgumentException` - if first and toCopy are out of range

    - #### Instances

          public Instances(java.lang.String name,
                   java.util.ArrayList<Attribute> attInfo,
                   int capacity)

      Creates an empty set of instances. Uses the given attribute information. Sets the capacity of the set of instances to 0 if its negative. Given attribute information must not be changed after this constructor has been used.
      Parameters:
        `name` - the name of the relation
        `attInfo` - the attribute information
        `capacity` - the capacity of the set
      Throws:
        `java.lang.IllegalArgumentException` - if attribute names are not unique

  - ### Method Detail

    - #### stringFreeStructure

          public Instances stringFreeStructure()

      Create a copy of the structure if the data has string or relational attributes, "cleanses" string types (i.e. doesn't contain references to the strings seen in the past) and all relational attributes.
      Returns:
        a copy of the instance structure.

    - #### add

          public boolean add(Instance instance)

      Adds one instance to the end of the set. Shallow copies instance before it is added. Increases the size of the dataset if it is not large enough. Does not check if the instance is compatible with the dataset. Note: String or relational values are not transferred.
      Specified by:
        `add` in interface `java.util.Collection<Instance>`
      Specified by:
        `add` in interface `java.util.List<Instance>`
      Overrides:
        `add` in class `java.util.AbstractList<Instance>`
      Parameters:
        `instance` - the instance to be added

    - #### add

          public void add(int index,
                 Instance instance)

      Adds one instance at the given position in the list. Shallow copies instance before it is added. Increases the size of the dataset if it is not large enough. Does not check if the instance is compatible with the dataset. Note: String or relational values are not transferred.
      Specified by:
        `add` in interface `java.util.List<Instance>`
      Overrides:
        `add` in class `java.util.AbstractList<Instance>`
      Parameters:
        `index` - position where instance is to be inserted
        `instance` - the instance to be added

    - #### attribute

          public Attribute attribute(int index)

      Returns an attribute.
      Parameters:
        `index` - the attribute's index (index starts with 0)
      Returns:
        the attribute at the given position

    - #### attribute

          public Attribute attribute(java.lang.String name)

      Returns an attribute given its name. If there is more than one attribute with the same name, it returns the first one. Returns null if the attribute can't be found.
      Parameters:
        `name` - the attribute's name
      Returns:
        the attribute with the given name, null if the attribute can't be found

    - #### checkForAttributeType

          public boolean checkForAttributeType(int attType)

      Checks for attributes of the given type in the dataset
      Parameters:
        `attType` - the attribute type to look for
      Returns:
        true if attributes of the given type are present

    - #### checkForStringAttributes

          public boolean checkForStringAttributes()

      Checks for string attributes in the dataset
      Returns:
        true if string attributes are present, false otherwise

    - #### checkInstance

          public boolean checkInstance(Instance instance)

      Checks if the given instance is compatible with this dataset. Only looks at the size of the instance and the ranges of the values for nominal and string attributes.
      Parameters:
        `instance` - the instance to check
      Returns:
        true if the instance is compatible with the dataset

    - #### classAttribute

          public Attribute classAttribute()

      Returns the class attribute.
      Returns:
        the class attribute
      Throws:
        `UnassignedClassException` - if the class is not set

    - #### classIndex

          public int classIndex()

      Returns the class attribute's index. Returns negative number if it's undefined.
      Returns:
        the class index as an integer

    - #### compactify

          public void compactify()

      Compactifies the set of instances. Decreases the capacity of the set so that it matches the number of instances in the set.

    - #### delete

          public void delete()

      Removes all instances from the set.

    - #### delete

          public void delete(int index)

      Removes an instance at the given position from the set.
      Parameters:
        `index` - the instance's position (index starts with 0)

    - #### deleteAttributeAt

          public void deleteAttributeAt(int position)

      Deletes an attribute at the given position (0 to numAttributes() - 1). Attribute objects after the deletion point are copied so that their indices can be decremented. Creates a fresh list to hold the old and new attribute objects.
      Parameters:
        `position` - the attribute's position (position starts with 0)
      Throws:
        `java.lang.IllegalArgumentException` - if the given index is out of range or the class attribute is being deleted

    - #### deleteAttributeType

          public void deleteAttributeType(int attType)

      Deletes all attributes of the given type in the dataset. A deep copy of the attribute information is performed before an attribute is deleted.
      Parameters:
        `attType` - the attribute type to delete
      Throws:
        `java.lang.IllegalArgumentException` - if attribute couldn't be successfully deleted (probably because it is the class attribute).

    - #### deleteStringAttributes

          public void deleteStringAttributes()

      Deletes all string attributes in the dataset. A deep copy of the attribute information is performed before an attribute is deleted.
      Throws:
        `java.lang.IllegalArgumentException` - if string attribute couldn't be successfully deleted (probably because it is the class attribute).
      See Also:
        `deleteAttributeType(int)`

    - #### deleteWithMissing

          public void deleteWithMissing(int attIndex)

      Removes all instances with missing values for a particular attribute from the dataset.
      Parameters:
        `attIndex` - the attribute's index (index starts with 0)

    - #### deleteWithMissing

          public void deleteWithMissing(Attribute att)

      Removes all instances with missing values for a particular attribute from the dataset.
      Parameters:
        `att` - the attribute

    - #### deleteWithMissingClass

          public void deleteWithMissingClass()

      Removes all instances with a missing class value from the dataset.
      Throws:
        `UnassignedClassException` - if class is not set

    - #### enumerateAttributes

          public java.util.Enumeration<Attribute> enumerateAttributes()

      Returns an enumeration of all the attributes. The class attribute (if set) is skipped by this enumeration.
      Returns:
        enumeration of all the attributes.

    - #### enumerateInstances

          public java.util.Enumeration<Instance> enumerateInstances()

      Returns an enumeration of all instances in the dataset.
      Returns:
        enumeration of all instances in the dataset

    - #### equalHeadersMsg

          public java.lang.String equalHeadersMsg(Instances dataset)

      Checks if two headers are equivalent. If not, then returns a message why they differ.
      Parameters:
        `dataset` - another dataset
      Returns:
        null if the header of the given dataset is equivalent to this header, otherwise a message with details on why they differ

    - #### equalHeaders

          public boolean equalHeaders(Instances dataset)

      Checks if two headers are equivalent.
      Parameters:
        `dataset` - another dataset
      Returns:
        true if the header of the given dataset is equivalent to this header

    - #### firstInstance

          public Instance firstInstance()

      Returns the first instance in the set.
      Returns:
        the first instance in the set

    - #### getRandomNumberGenerator

          public java.util.Random getRandomNumberGenerator(long seed)

      Returns a random number generator. The initial seed of the random number generator depends on the given seed and the hash code of a string representation of a instances chosen based on the given seed.
      Parameters:
        `seed` - the given seed
      Returns:
        the random number generator

    - #### insertAttributeAt

          public void insertAttributeAt(Attribute att,
                               int position)

      Inserts an attribute at the given position (0 to numAttributes()) and sets all values to be missing. Shallow copies the attribute before it is inserted. Existing attribute objects at and after the insertion point are also copied so that their indices can be incremented. Creates a fresh list to hold the old and new attribute objects.
      Parameters:
        `att` - the attribute to be inserted
        `position` - the attribute's position (position starts with 0)
      Throws:
        `java.lang.IllegalArgumentException` - if the given index is out of range

    - #### instance

          public Instance instance(int index)

      Returns the instance at the given position.
      Parameters:
        `index` - the instance's index (index starts with 0)
      Returns:
        the instance at the given position

    - #### get

          public Instance get(int index)

      Returns the instance at the given position.
      Specified by:
        `get` in interface `java.util.List<Instance>`
      Specified by:
        `get` in class `java.util.AbstractList<Instance>`
      Parameters:
        `index` - the instance's index (index starts with 0)
      Returns:
        the instance at the given position

    - #### kthSmallestValue

          public double kthSmallestValue(Attribute att,
                                int k)

      Returns the kth-smallest attribute value of a numeric attribute.
      Parameters:
        `att` - the Attribute object
        `k` - the value of k
      Returns:
        the kth-smallest value

    - #### kthSmallestValue

          public double kthSmallestValue(int attIndex,
                                int k)

      Returns the kth-smallest attribute value of a numeric attribute. NOTE CHANGE: Missing values (NaN values) are now treated as Double.MAX_VALUE. Also, the order of the instances in the data is no longer affected.
      Parameters:
        `attIndex` - the attribute's index
        `k` - the value of k
      Returns:
        the kth-smallest value

    - #### lastInstance

          public Instance lastInstance()

      Returns the last instance in the set.
      Returns:
        the last instance in the set

    - #### meanOrMode

          public double meanOrMode(int attIndex)

      Returns the mean (mode) for a numeric (nominal) attribute as a floating-point value. Returns 0 if the attribute is neither nominal nor numeric. If all values are missing it returns zero.
      Parameters:
        `attIndex` - the attribute's index (index starts with 0)
      Returns:
        the mean or the mode

    - #### meanOrMode

          public double meanOrMode(Attribute att)

      Returns the mean (mode) for a numeric (nominal) attribute as a floating-point value. Returns 0 if the attribute is neither nominal nor numeric. If all values are missing it returns zero.
      Parameters:
        `att` - the attribute
      Returns:
        the mean or the mode

    - #### numAttributes

          public int numAttributes()

      Returns the number of attributes.
      Returns:
        the number of attributes as an integer

    - #### numClasses

          public int numClasses()

      Returns the number of class labels.
      Returns:
        the number of class labels as an integer if the class attribute is nominal, 1 otherwise.
      Throws:
        `UnassignedClassException` - if the class is not set

    - #### numDistinctValues

          public int numDistinctValues(int attIndex)

      Returns the number of distinct values of a given attribute. Returns the number of instances if the attribute is a string attribute. The value 'missing' is not counted.
      Parameters:
        `attIndex` - the attribute (index starts with 0)
      Returns:
        the number of distinct values of a given attribute

    - #### numDistinctValues

          public int numDistinctValues(Attribute att)

      Returns the number of distinct values of a given attribute. Returns the number of instances if the attribute is a string attribute. The value 'missing' is not counted.
      Parameters:
        `att` - the attribute
      Returns:
        the number of distinct values of a given attribute

    - #### numInstances

          public int numInstances()

      Returns the number of instances in the dataset.
      Returns:
        the number of instances in the dataset as an integer

    - #### size

          public int size()

      Returns the number of instances in the dataset.
      Specified by:
        `size` in interface `java.util.Collection<Instance>`
      Specified by:
        `size` in interface `java.util.List<Instance>`
      Specified by:
        `size` in class `java.util.AbstractCollection<Instance>`
      Returns:
        the number of instances in the dataset as an integer

    - #### randomize

          public void randomize(java.util.Random random)

      Shuffles the instances in the set so that they are ordered randomly.
      Parameters:
        `random` - a random number generator

    - #### readInstance

          @Deprecated
          public boolean readInstance(java.io.Reader reader)
                               throws java.io.IOException

      Deprecated. instead of using this method in conjunction with the `readInstance(Reader)` method, one should use the `ArffLoader` or `DataSource` class instead.
      Reads a single instance from the reader and appends it to the dataset. Automatically expands the dataset if it is not large enough to hold the instance. This method does not check for carriage return at the end of the line.
      Parameters:
        `reader` - the reader
      Returns:
        false if end of file has been reached
      Throws:
        `java.io.IOException` - if the information is not read successfully
      See Also:
        `ArffLoader`, `ConverterUtils.DataSource`

    - #### replaceAttributeAt

          public void replaceAttributeAt(Attribute att,
                                int position)

      Replaces the attribute at the given position (0 to numAttributes()) with the given attribute and sets all its values to be missing. Shallow copies the given attribute before it is inserted. Creates a fresh list to hold the old and new attribute objects.
      Parameters:
        `att` - the attribute to be inserted
        `position` - the attribute's position (position starts with 0)
      Throws:
        `java.lang.IllegalArgumentException` - if the given index is out of range

    - #### relationName

          public java.lang.String relationName()

      Returns the relation's name.
      Returns:
        the relation's name as a string

    - #### remove

          public Instance remove(int index)

      Removes the instance at the given position.
      Specified by:
        `remove` in interface `java.util.List<Instance>`
      Overrides:
        `remove` in class `java.util.AbstractList<Instance>`
      Parameters:
        `index` - the instance's index (index starts with 0)
      Returns:
        the instance at the given position

    - #### renameAttribute

          public void renameAttribute(int att,
                             java.lang.String name)

      Renames an attribute. This change only affects this dataset.
      Parameters:
        `att` - the attribute's index (index starts with 0)
        `name` - the new name

    - #### renameAttribute

          public void renameAttribute(Attribute att,
                             java.lang.String name)

      Renames an attribute. This change only affects this dataset.
      Parameters:
        `att` - the attribute
        `name` - the new name

    - #### renameAttributeValue

          public void renameAttributeValue(int att,
                                  int val,
                                  java.lang.String name)

      Renames the value of a nominal (or string) attribute value. This change only affects this dataset.
      Parameters:
        `att` - the attribute's index (index starts with 0)
        `val` - the value's index (index starts with 0)
        `name` - the new name

    - #### renameAttributeValue

          public void renameAttributeValue(Attribute att,
                                  java.lang.String val,
                                  java.lang.String name)

      Renames the value of a nominal (or string) attribute value. This change only affects this dataset.
      Parameters:
        `att` - the attribute
        `val` - the value
        `name` - the new name

    - #### resample

          public Instances resample(java.util.Random random)

      Creates a new dataset of the same size using random sampling with replacement.
      Parameters:
        `random` - a random number generator
      Returns:
        the new dataset

    - #### resampleWithWeights

          public Instances resampleWithWeights(java.util.Random random)

      Creates a new dataset of the same size using random sampling with replacement according to the current instance weights. The weights of the instances in the new dataset are set to one. See also resampleWithWeights(Random, double[], boolean[]).
      Parameters:
        `random` - a random number generator
      Returns:
        the new dataset

    - #### resampleWithWeights

          public Instances resampleWithWeights(java.util.Random random,
                                      boolean[] sampled)

      Creates a new dataset of the same size using random sampling with replacement according to the current instance weights. The weights of the instances in the new dataset are set to one. See also resampleWithWeights(Random, double[], boolean[]).
      Parameters:
        `random` - a random number generator
        `sampled` - an array indicating what has been sampled
      Returns:
        the new dataset

    - #### resampleWithWeights

          public Instances resampleWithWeights(java.util.Random random,
                                      boolean representUsingWeights)

      Creates a new dataset of the same size using random sampling with replacement according to the current instance weights. The weights of the instances in the new dataset are set to one. See also resampleWithWeights(Random, double[], boolean[]).
      Parameters:
        `random` - a random number generator
        `representUsingWeights` - if true, copies are represented using weights in resampled data
      Returns:
        the new dataset

    - #### resampleWithWeights

          public Instances resampleWithWeights(java.util.Random random,
                                      boolean[] sampled,
                                      boolean representUsingWeights)

      Creates a new dataset of the same size using random sampling with replacement according to the current instance weights. The weights of the instances in the new dataset are set to one. See also resampleWithWeights(Random, double[], boolean[]).
      Parameters:
        `random` - a random number generator
        `sampled` - an array indicating what has been sampled
        `representUsingWeights` - if true, copies are represented using weights in resampled data
      Returns:
        the new dataset

    - #### resampleWithWeights

          public Instances resampleWithWeights(java.util.Random random,
                                      double[] weights)

      Creates a new dataset of the same size using random sampling with replacement according to the given weight vector. See also resampleWithWeights(Random, double[], boolean[]).
      Parameters:
        `random` - a random number generator
        `weights` - the weight vector
      Returns:
        the new dataset
      Throws:
        `java.lang.IllegalArgumentException` - if the weights array is of the wrong length or contains negative weights.

    - #### resampleWithWeights

          public Instances resampleWithWeights(java.util.Random random,
                                      double[] weights,
                                      boolean[] sampled)

      Creates a new dataset of the same size using random sampling with replacement according to the given weight vector. The weights of the instances in the new dataset are set to one. The length of the weight vector has to be the same as the number of instances in the dataset, and all weights have to be positive. Uses Walker's method, see pp. 232 of "Stochastic Simulation" by B.D. Ripley (1987).
      Parameters:
        `random` - a random number generator
        `weights` - the weight vector
        `sampled` - an array indicating what has been sampled, can be null
      Returns:
        the new dataset
      Throws:
        `java.lang.IllegalArgumentException` - if the weights array is of the wrong length or contains negative weights.

    - #### resampleWithWeights

          public Instances resampleWithWeights(java.util.Random random,
                                      double[] weights,
                                      boolean[] sampled,
                                      boolean representUsingWeights)

      Creates a new dataset of the same size using random sampling with replacement according to the given weight vector. The weights of the instances in the new dataset are set to one. The length of the weight vector has to be the same as the number of instances in the dataset, and all weights have to be positive. Uses Walker's method, see pp. 232 of "Stochastic Simulation" by B.D. Ripley (1987).
      Parameters:
        `random` - a random number generator
        `weights` - the weight vector
        `sampled` - an array indicating what has been sampled, can be null
        `representUsingWeights` - if true, copies are represented using weights in resampled data
      Returns:
        the new dataset
      Throws:
        `java.lang.IllegalArgumentException` - if the weights array is of the wrong length or contains negative weights.

    - #### set

          public Instance set(int index,
                     Instance instance)

      Replaces the instance at the given position. Shallow copies instance before it is added. Does not check if the instance is compatible with the dataset. Note: String or relational values are not transferred.
      Specified by:
        `set` in interface `java.util.List<Instance>`
      Overrides:
        `set` in class `java.util.AbstractList<Instance>`
      Parameters:
        `index` - position where instance is to be inserted
        `instance` - the instance to be inserted
      Returns:
        the instance previously at that position

    - #### setClass

          public void setClass(Attribute att)

      Sets the class attribute.
      Parameters:
        `att` - attribute to be the class

    - #### setClassIndex

          public void setClassIndex(int classIndex)

      Sets the class index of the set. If the class index is negative there is assumed to be no class. (ie. it is undefined)
      Parameters:
        `classIndex` - the new class index (index starts with 0)
      Throws:
        `java.lang.IllegalArgumentException` - if the class index is too big or < 0

    - #### setRelationName

          public void setRelationName(java.lang.String newName)

      Sets the relation's name.
      Parameters:
        `newName` - the new relation name.

    - #### sort

          public void sort(int attIndex)

      Sorts the instances based on an attribute. For numeric attributes, instances are sorted in ascending order. For nominal attributes, instances are sorted based on the attribute label ordering specified in the header. Instances with missing values for the attribute are placed at the end of the dataset.
      Parameters:
        `attIndex` - the attribute's index (index starts with 0)

    - #### sort

          public void sort(Attribute att)

      Sorts the instances based on an attribute. For numeric attributes, instances are sorted into ascending order. For nominal attributes, instances are sorted based on the attribute label ordering specified in the header. Instances with missing values for the attribute are placed at the end of the dataset.
      Parameters:
        `att` - the attribute

    - #### stableSort

          public void stableSort(int attIndex)

      Sorts the instances based on an attribute, using a stable sort. For numeric attributes, instances are sorted in ascending order. For nominal attributes, instances are sorted based on the attribute label ordering specified in the header. Instances with missing values for the attribute are placed at the end of the dataset.
      Parameters:
        `attIndex` - the attribute's index (index starts with 0)

    - #### stableSort

          public void stableSort(Attribute att)

      Sorts the instances based on an attribute, using a stable sort. For numeric attributes, instances are sorted into ascending order. For nominal attributes, instances are sorted based on the attribute label ordering specified in the header. Instances with missing values for the attribute are placed at the end of the dataset.
      Parameters:
        `att` - the attribute

    - #### stratify

          public void stratify(int numFolds)

      Stratifies a set of instances according to its class values if the class attribute is nominal (so that afterwards a stratified cross-validation can be performed).
      Parameters:
        `numFolds` - the number of folds in the cross-validation
      Throws:
        `UnassignedClassException` - if the class is not set

    - #### sumOfWeights

          public double sumOfWeights()

      Computes the sum of all the instances' weights.
      Returns:
        the sum of all the instances' weights as a double

    - #### testCV

          public Instances testCV(int numFolds,
                         int numFold)

      Creates the test set for one fold of a cross-validation on the dataset.
      Parameters:
        `numFolds` - the number of folds in the cross-validation. Must be greater than 1.
        `numFold` - 0 for the first fold, 1 for the second, ...
      Returns:
        the test set as a set of weighted instances
      Throws:
        `java.lang.IllegalArgumentException` - if the number of folds is less than 2 or greater than the number of instances.

    - #### toString

          public java.lang.String toString()

      Returns the dataset as a string in ARFF format. Strings are quoted if they contain whitespace characters, or if they are a question mark.
      Overrides:
        `toString` in class `java.util.AbstractCollection<Instance>`
      Returns:
        the dataset in ARFF format as a string

    - #### trainCV

          public Instances trainCV(int numFolds,
                          int numFold)

      Creates the training set for one fold of a cross-validation on the dataset.
      Parameters:
        `numFolds` - the number of folds in the cross-validation. Must be greater than 1.
        `numFold` - 0 for the first fold, 1 for the second, ...
      Returns:
        the training set
      Throws:
        `java.lang.IllegalArgumentException` - if the number of folds is less than 2 or greater than the number of instances.

    - #### trainCV

          public Instances trainCV(int numFolds,
                          int numFold,
                          java.util.Random random)

      Creates the training set for one fold of a cross-validation on the dataset. The data is subsequently randomized based on the given random number generator.
      Parameters:
        `numFolds` - the number of folds in the cross-validation. Must be greater than 1.
        `numFold` - 0 for the first fold, 1 for the second, ...
        `random` - the random number generator
      Returns:
        the training set
      Throws:
        `java.lang.IllegalArgumentException` - if the number of folds is less than 2 or greater than the number of instances.

    - #### variances

          public double[] variances()

      Computes the variance for all numeric attributes simultaneously. This is faster than calling variance() for each attribute. The resulting array has as many dimensions as there are attributes. Array elements corresponding to non-numeric attributes are set to 0.
      Returns:
        the array containing the variance values

    - #### variance

          public double variance(int attIndex)

      Computes the variance for a numeric attribute.
      Parameters:
        `attIndex` - the numeric attribute (index starts with 0)
      Returns:
        the variance if the attribute is numeric
      Throws:
        `java.lang.IllegalArgumentException` - if the attribute is not numeric

    - #### variance

          public double variance(Attribute att)

      Computes the variance for a numeric attribute.
      Parameters:
        `att` - the numeric attribute
      Returns:
        the variance if the attribute is numeric
      Throws:
        `java.lang.IllegalArgumentException` - if the attribute is not numeric

    - #### attributeStats

          public AttributeStats attributeStats(int index)

      Calculates summary statistics on the values that appear in this set of instances for a specified attribute.
      Parameters:
        `index` - the index of the attribute to summarize (index starts with 0)
      Returns:
        an AttributeStats object with it's fields calculated.

    - #### attributeToDoubleArray

          public double[] attributeToDoubleArray(int index)

      Gets the value of all instances in this dataset for a particular attribute. Useful in conjunction with Utils.sort to allow iterating through the dataset in sorted order for some attribute.
      Parameters:
        `index` - the index of the attribute.
      Returns:
        an array containing the value of the desired attribute for each instance in the dataset.

    - #### toSummaryString

          public java.lang.String toSummaryString()

      Generates a string summarizing the set of instances. Gives a breakdown for each attribute indicating the number of missing/discrete/unique values and other information.
      Returns:
        a string summarizing the dataset

    - #### swap

          public void swap(int i,
                  int j)

      Swaps two instances in the set.
      Parameters:
        `i` - the first instance's index (index starts with 0)
        `j` - the second instance's index (index starts with 0)

    - #### mergeInstances

          public static Instances mergeInstances(Instances first,
                                 Instances second)

      Merges two sets of Instances together. The resulting set will have all the attributes of the first set plus all the attributes of the second set. The number of instances in both sets must be the same.
      Parameters:
        `first` - the first set of Instances
        `second` - the second set of Instances
      Returns:
        the merged set of Instances
      Throws:
        `java.lang.IllegalArgumentException` - if the datasets are not the same size

    - #### test

          public static void test(java.lang.String[] argv)

      Method for testing this class.
      Parameters:
        `argv` - should contain one element: the name of an ARFF file

    - #### main

          public static void main(java.lang.String[] args)

      Main method for this class. The following calls are possible:
      - `weka.core.Instances` help
        prints a short list of possible commands.
      - `weka.core.Instances` <filename>
        prints a summary of a set of instances.
      - `weka.core.Instances` merge <filename1> <filename2>
        merges the two datasets (must have same number of instances) and outputs the results on stdout.
      - `weka.core.Instances` append <filename1> <filename2>
        appends the second dataset to the first one (must have same headers) and outputs the results on stdout.
      - `weka.core.Instances` headers <filename1> <filename2>
        Compares the headers of the two datasets and prints whether they match or not.
      - `weka.core.Instances` randomize <seed> <filename>
        randomizes the dataset with the given seed and outputs the result on stdout.
      Parameters:
        `args` - the commandline parameters

    - #### getRevision

          public java.lang.String getRevision()

      Returns the revision string.
      Specified by:
        `getRevision` in interface `RevisionHandler`
      Returns:
        the revision