weka.classifiers.evaluation.output.prediction

## Class AbstractOutput

- java.lang.Object
- - weka.classifiers.evaluation.output.prediction.AbstractOutput

- All Implemented Interfaces:
    java.io.Serializable, OptionHandler
  Direct Known Subclasses:
    CSV, HTML, Null, PlainText, XML

      public abstract class AbstractOutput
      extends java.lang.Object
      implements java.io.Serializable, OptionHandler

  A superclass for outputting the classifications of a classifier.

  Basic use with a classifier and a test set:

       Classifier classifier = ... // trained classifier
       Instances testset = ... // the test set to output the predictions for
       StringBuffer buffer = ... // the string buffer to add the output to
       AbstractOutput output = new FunkyOutput();
       output.setHeader(...);
       output.printClassifications(classifier, testset);

  Basic use with a classifier and a data source:

       Classifier classifier = ... // trained classifier
       DataSource testset = ... // the data source to obtain the test set from to output the predictions for
       StringBuffer buffer = ... // the string buffer to add the output to
       AbstractOutput output = new FunkyOutput();
       output.setHeader(...);
       output.printClassifications(classifier, testset);

  In order to make the output generation easily integrate into GUI components, one can output the header, classifications and footer separately:

       Classifier classifier = ... // trained classifier
       Instances testset = ... // the test set to output the predictions for
       StringBuffer buffer = ... // the string buffer to add the output to
       AbstractOutput output = new FunkyOutput();
       output.setHeader(...);
       // print the header
       output.printHeader();
       // print the classifications one-by-one
       for (int i = 0; i < testset.numInstances(); i++) {
         output.printClassification(classifier, testset.instance(i), i);
         // output progress information
         if ((i+1) % 100 == 0)
           System.out.println((i+1) + "/" + testset.numInstances());
       }
       // print the footer
       output.printFooter();

  Version:
    $Revision: 10169 $
  Author:
    fracpete (fracpete at waikato dot ac dot nz)
  See Also:
    Serialized Form

- - ### Constructor Summary

    Constructors
    Constructor and Description
    `AbstractOutput()` Initializes the output class.

  - ### Method Summary

    Methods
    Modifier and Type | Method and Description
    --- | ---
    `java.lang.String` | `attributesTipText()` Returns the tip text for this property.
    `static AbstractOutput` | `fromCommandline(java.lang.String cmdline)` Returns a fully configured object from the given commandline.
    `boolean` | `generatesOutput()` Returns whether regular output is generated or not.
    `java.lang.String` | `getAttributes()` Returns the range of attributes to output.
    `java.lang.StringBuffer` | `getBuffer()` Returns the current buffer.
    `int` | `getDefaultNumDecimals()` Returns the default number of digits to output after the decimal point.
    `abstract java.lang.String` | `getDisplay()` Returns a short display text, to be used in comboboxes.
    `Instances` | `getHeader()` Returns the header of the dataset.
    `int` | `getNumDecimals()` Returns the number of digits to output after the decimal point.
    `java.lang.String[]` | `getOptions()` Gets the current option settings for the OptionHandler.
    `boolean` | `getOutputDistribution()` Returns whether to output the class distribution as well.
    `java.io.File` | `getOutputFile()` Returns the output file to write to.
    `boolean` | `getSuppressOutput()` Returns whether to the regular output is suppressed in case the output is stored in a file.
    `abstract java.lang.String` | `globalInfo()` Returns a string describing the output generator.
    `java.util.Enumeration<Option>` | `listOptions()` Returns an enumeration of all the available options..
    `java.lang.String` | `numDecimalsTipText()` Returns the tip text for this property.
    `java.lang.String` | `outputDistributionTipText()` Returns the tip text for this property.
    `java.lang.String` | `outputFileTipText()` Returns the tip text for this property.
    `void` | `print(Classifier classifier, ConverterUtils.DataSource testset)` Prints the header, classifications and footer to the buffer.
    `void` | `print(Classifier classifier, Instances testset)` Prints the header, classifications and footer to the buffer.
    `void` | `printClassification(Classifier classifier, Instance inst, int index)` Prints the classification to the buffer.
    `void` | `printClassification(double[] dist, Instance inst, int index)` Prints the classification to the buffer.
    `void` | `printClassifications(Classifier classifier, ConverterUtils.DataSource testset)` Prints the classifications to the buffer.
    `void` | `printClassifications(Classifier classifier, Instances testset)` Prints the classifications to the buffer.
    `void` | `printFooter()` Prints the footer to the buffer.
    `void` | `printHeader()` Prints the header to the buffer.
    `void` | `setAttributes(java.lang.String value)` Sets the range of attributes to output.
    `void` | `setBuffer(java.lang.StringBuffer value)` Sets the buffer to use.
    `void` | `setHeader(Instances value)` Sets the header of the dataset.
    `void` | `setNumDecimals(int value)` Sets the number of digits to output after the decimal point.
    `void` | `setOptions(java.lang.String[] options)` Sets the OptionHandler's options using the given list.
    `void` | `setOutputDistribution(boolean value)` Sets whether to output the class distribution or not.
    `void` | `setOutputFile(java.io.File value)` Sets the output file to write to.
    `void` | `setSuppressOutput(boolean value)` Sets whether to the regular output is suppressed in case the output is stored in a file.
    `java.lang.String` | `suppressOutputTipText()` Returns the tip text for this property.

    - ### Methods inherited from class java.lang.Object

      `equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

- - ### Constructor Detail

    - #### AbstractOutput

          public AbstractOutput()

      Initializes the output class.

  - ### Method Detail

    - #### globalInfo

          public abstract java.lang.String globalInfo()

      Returns a string describing the output generator.
      Returns:
        a description suitable for displaying in the GUI

    - #### getDisplay

          public abstract java.lang.String getDisplay()

      Returns a short display text, to be used in comboboxes.
      Returns:
        a short display text

    - #### listOptions

          public java.util.Enumeration<Option> listOptions()

      Returns an enumeration of all the available options..
      Specified by:
        `listOptions` in interface `OptionHandler`
      Returns:
        an enumeration of all available options.

    - #### setOptions

          public void setOptions(java.lang.String[] options)
                          throws java.lang.Exception

      Sets the OptionHandler's options using the given list. All options will be set (or reset) during this call (i.e. incremental setting of options is not possible).
      Specified by:
        `setOptions` in interface `OptionHandler`
      Parameters:
        `options` - the list of options as an array of strings
      Throws:
        `java.lang.Exception` - if an option is not supported

    - #### getOptions

          public java.lang.String[] getOptions()

      Gets the current option settings for the OptionHandler.
      Specified by:
        `getOptions` in interface `OptionHandler`
      Returns:
        the list of current option settings as an array of strings

    - #### setHeader

          public void setHeader(Instances value)

      Sets the header of the dataset.
      Parameters:
        `value` - the header

    - #### getHeader

          public Instances getHeader()

      Returns the header of the dataset.
      Returns:
        the header

    - #### setBuffer

          public void setBuffer(java.lang.StringBuffer value)

      Sets the buffer to use.
      Parameters:
        `value` - the buffer

    - #### getBuffer

          public java.lang.StringBuffer getBuffer()

      Returns the current buffer.
      Returns:
        the buffer, can be null

    - #### setAttributes

          public void setAttributes(java.lang.String value)

      Sets the range of attributes to output.
      Parameters:
        `value` - the range

    - #### getAttributes

          public java.lang.String getAttributes()

      Returns the range of attributes to output.
      Returns:
        the range

    - #### attributesTipText

          public java.lang.String attributesTipText()

      Returns the tip text for this property.
      Returns:
        tip text for this property suitable for displaying in the GUI

    - #### setOutputDistribution

          public void setOutputDistribution(boolean value)

      Sets whether to output the class distribution or not.
      Parameters:
        `value` - true if the class distribution is to be output as well

    - #### getOutputDistribution

          public boolean getOutputDistribution()

      Returns whether to output the class distribution as well.
      Returns:
        true if the class distribution is output as well

    - #### outputDistributionTipText

          public java.lang.String outputDistributionTipText()

      Returns the tip text for this property.
      Returns:
        tip text for this property suitable for displaying in the GUI

    - #### getDefaultNumDecimals

          public int getDefaultNumDecimals()

      Returns the default number of digits to output after the decimal point.
      Returns:
        the default number of digits

    - #### setNumDecimals

          public void setNumDecimals(int value)

      Sets the number of digits to output after the decimal point.
      Parameters:
        `value` - the number of digits

    - #### getNumDecimals

          public int getNumDecimals()

      Returns the number of digits to output after the decimal point.
      Returns:
        the number of digits

    - #### numDecimalsTipText

          public java.lang.String numDecimalsTipText()

      Returns the tip text for this property.
      Returns:
        tip text for this property suitable for displaying in the GUI

    - #### setOutputFile

          public void setOutputFile(java.io.File value)

      Sets the output file to write to. A directory disables this feature.
      Parameters:
        `value` - the file to write to or a directory

    - #### getOutputFile

          public java.io.File getOutputFile()

      Returns the output file to write to. A directory if turned off.
      Returns:
        the file to write to or a directory

    - #### outputFileTipText

          public java.lang.String outputFileTipText()

      Returns the tip text for this property.
      Returns:
        tip text for this property suitable for displaying in the GUI

    - #### setSuppressOutput

          public void setSuppressOutput(boolean value)

      Sets whether to the regular output is suppressed in case the output is stored in a file.
      Parameters:
        `value` - true if the regular output is to be suppressed

    - #### getSuppressOutput

          public boolean getSuppressOutput()

      Returns whether to the regular output is suppressed in case the output is stored in a file.
      Returns:
        true if the regular output is to be suppressed

    - #### suppressOutputTipText

          public java.lang.String suppressOutputTipText()

      Returns the tip text for this property.
      Returns:
        tip text for this property suitable for displaying in the GUI

    - #### generatesOutput

          public boolean generatesOutput()

      Returns whether regular output is generated or not.
      Returns:
        true if regular output is generated

    - #### printHeader

          public void printHeader()

      Prints the header to the buffer.

    - #### printClassification

          public void printClassification(Classifier classifier,
                                 Instance inst,
                                 int index)
                                   throws java.lang.Exception

      Prints the classification to the buffer.
      Parameters:
        `classifier` - the classifier to use for printing the classification
        `inst` - the instance to print
        `index` - the index of the instance
      Throws:
        `java.lang.Exception` - if check fails or error occurs during printing of classification

    - #### printClassification

          public void printClassification(double[] dist,
                                 Instance inst,
                                 int index)
                                   throws java.lang.Exception

      Prints the classification to the buffer.
      Parameters:
        `dist` - the distribution from classifier for the supplied instance
        `inst` - the instance to print
        `index` - the index of the instance
      Throws:
        `java.lang.Exception` - if check fails or error occurs during printing of classification

    - #### printClassifications

          public void printClassifications(Classifier classifier,
                                  ConverterUtils.DataSource testset)
                                    throws java.lang.Exception

      Prints the classifications to the buffer.
      Parameters:
        `classifier` - the classifier to use for printing the classifications
        `testset` - the data source to obtain the test instances from
      Throws:
        `java.lang.Exception` - if check fails or error occurs during printing of classifications

    - #### printClassifications

          public void printClassifications(Classifier classifier,
                                  Instances testset)
                                    throws java.lang.Exception

      Prints the classifications to the buffer.
      Parameters:
        `classifier` - the classifier to use for printing the classifications
        `testset` - the test instances
      Throws:
        `java.lang.Exception` - if check fails or error occurs during printing of classifications

    - #### printFooter

          public void printFooter()
                           throws java.lang.Exception

      Prints the footer to the buffer. This will also store the generated output in a file if an output file was specified.
      Throws:
        `java.lang.Exception` - if check fails

    - #### print

          public void print(Classifier classifier,
                   ConverterUtils.DataSource testset)
                     throws java.lang.Exception

      Prints the header, classifications and footer to the buffer.
      Parameters:
        `classifier` - the classifier to use for printing the classifications
        `testset` - the data source to obtain the test instances from
      Throws:
        `java.lang.Exception` - if check fails or error occurs during printing of classifications

    - #### print

          public void print(Classifier classifier,
                   Instances testset)
                     throws java.lang.Exception

      Prints the header, classifications and footer to the buffer.
      Parameters:
        `classifier` - the classifier to use for printing the classifications
        `testset` - the test instances
      Throws:
        `java.lang.Exception` - if check fails or error occurs during printing of classifications

    - #### fromCommandline

          public static AbstractOutput fromCommandline(java.lang.String cmdline)

      Returns a fully configured object from the given commandline.
      Parameters:
        `cmdline` - the commandline to turn into an object
      Returns:
        the object or null in case of an error